research-pipeline

Automate research workflows from idea discovery to submission-ready papers.

2|Updated Mar 29, 2026
One-click install
npx skills add https://github.com/satsuki-64/MiniAgentWorkflow --skill research-pipeline-satsuki-64
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: research-pipeline
Source: https://github.com/satsuki-64/MiniAgentWorkflow/tree/main/.skills/research-pipeline
Command: npx skills add https://github.com/satsuki-64/MiniAgentWorkflow --skill research-pipeline-satsuki-64

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

Automates the end-to-end research lifecycle, transforming scattered ideas into a structured, submission-ready paper.

Core Features & Use Cases

  • End-to-end orchestration: from idea discovery through experiments to final submission.
  • Configurable automation gates: AUTO_PROCEED, ARXIV_DOWNLOAD, and HUMAN_CHECKPOINT enable autonomous or human-in-the-loop workflows.
  • Tracking and artifacts: outputs include IDEA_REPORT.md, implementation notes, and final reports for reproducibility.

Quick Start

Initiate the full research pipeline by providing a research direction and let the system orchestrate stages from idea discovery through submission.

Frequently Asked Questions about research-pipeline

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I automate the research pipeline from idea discovery to paper submission?

An automated research pipeline orchestrates end-to-end workflows from idea generation to submission-ready papers. It handles literature review, experiment design, and paper drafting, with optional human checkpoints for review.

Can I configure the research pipeline to run autonomously without human intervention?

Yes, the pipeline supports autonomous workflows through configurable automation gates like AUTO_PROCEED and ARXIV_DOWNLOAD. These settings enable the system to run stages continuously without requiring manual approval at each step.

Does the automated research pipeline support fetching literature from arXiv?

Yes, the pipeline supports fetching literature from arXiv through configurable ARXIV_DOWNLOAD options. This feature integrates arXiv paper retrieval directly into the Stage 1 idea discovery and literature review workflow.

What stages are included in an end-to-end automated research pipeline?

The end-to-end research pipeline implements five stages: Stage 1 idea discovery, Stage 2 implementation, Stage 3 deployment, Stage 4 auto-review, and Stage 5 final reporting. Each stage outputs tracking artifacts for reproducibility.

What output files does the automated research pipeline generate for reproducibility?

The pipeline outputs IDEA_REPORT.md, implementation notes, and final reports as tracking artifacts. These files ensure reproducibility by documenting the entire research lifecycle from idea discovery through final submission.

What are the limitations of using a fully autonomous research pipeline for paper drafting?

A fully autonomous pipeline may lack domain-specific nuance during experiment design and paper drafting. Enabling HUMAN_CHECKPOINT at critical stages allows researchers to validate findings and review outputs before final submission.