Research Workflow

Manage academic research papers from discovery to citation verification.

Updated Feb 13, 2026
One-click install
npx skills add https://github.com/JonasTischer/research-workflow --skill research-workflow-jonastischer
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: Research Workflow
Source: https://github.com/JonasTischer/research-workflow/tree/main
Command: npx skills add https://github.com/JonasTischer/research-workflow --skill research-workflow-jonastischer

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill requires marker-pdf, pymupdf, watchdog, google-genai, pyyaml, python-dotenv, rich, httpx, anthropic, and includes scripts (resource) and references (resource) and assets (resource) components.

What problem does it solve?

This Skill automates the tedious process of managing research papers for thesis writing, from finding and downloading to reading, summarizing, and verifying citations.

Core Features & Use Cases

  • Paper Discovery: Find relevant academic papers using semantic search engines like Semantic Scholar and arXiv.
  • Automated Download & Conversion: Download papers directly and automatically convert them from PDF to Markdown for easy reading.
  • AI Summarization & Verification: Generate concise summaries of papers and verify claims against the source content using AI subagents.
  • Use Case: A PhD student can use this Skill to quickly build a literature review by finding, downloading, and summarizing dozens of papers, ensuring all claims made in their thesis are accurately supported by the cited sources.

Quick Start

Use the research workflow skill to find papers about "attention mechanisms in vision transformers".

Frequently Asked Questions about Research Workflow

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I automate finding and downloading academic papers for my thesis?

Automate academic paper discovery for your thesis by using this research workflow to query semantic search engines like Semantic Scholar and arXiv, which handles finding and downloading relevant literature automatically.

Can I convert research PDFs to markdown for easier reading and AI processing?

Yes, you can convert research PDFs to markdown automatically. The workflow downloads papers and converts them from PDF format into markdown, enabling easier reading and direct processing by AI subagents for summarization.

How does AI citation verification work for academic writing?

AI citation verification for academic writing works by deploying AI subagents to validate claims against source content. The workflow checks your thesis text to ensure all citations are accurately supported by the downloaded literature.

What is the best way to build and maintain a literature corpus for a PhD?

The best way to build a literature corpus for a PhD is using a structured research workflow that automates discovery, PDF conversion, AI summarization, and citation verification, efficiently maintaining your entire reference library.

Do I need API keys to use semantic search for academic research?

Yes, you need API keys for semantic search. The workflow integrates with external APIs like Semantic Scholar and arXiv for searching and downloading papers, requiring environment setup via python-dotenv to manage these connections.

What are the limitations of using AI subagents for paper summarization?

Limitations of using AI subagents for paper summarization include relying on the accuracy of PDF to markdown conversion via marker-pdf and pymupdf, meaning complex formatting or scanned images might degrade the quality of the generated summaries.