sc-data-profiler
CommunityQC profiling for 10x single-cell data.
Authorya-way
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Profile raw 10x Genomics single-cell matrices without modification and provide robust QC statistics to guide adaptive preprocessing decisions, batch QC, and thresholding before filtering.
Core Features & Use Cases
- Read raw 10x input (mtx/tsv or h5) without altering data and compute per-cell metrics (n_cells, genes per cell, mito percent).
- Produce QC summaries including mito_pct_quantiles (q25, q50, q90) and recommended mito cutoff candidates for data-driven filtering.
- Use cases: when a user asks for single-cell preprocessing, PBMC QC, basic data diagnostics, or threshold selection prior to filtering.
Quick Start
Provide the path to the raw 10x dataset to generate a QC summary JSON for downstream decisions.
Dependency Matrix
Required Modules
scanpynumpy
Components
scripts
💻 Claude Code Installation
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Please help me install this Skill: Name: sc-data-profiler Download link: https://github.com/ya-way/cytoclaw-skills/archive/main.zip#sc-data-profiler Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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