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scientific-alphafold-structures

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Fetch AlphaFold data and assess pLDDT.

Education & Research#bioinformatics#rest-api#pae#plddt#alphafold#protein-structure#uniprot
Authornahisaho
Version1.0.0
Installs0

System Documentation

What problem does it solve?

This Skill enables researchers to fetch AlphaFold predictions for UniProt proteins and assess confidence metrics, providing a streamlined way to gauge structural reliability and prepare for downstream analyses.

Core Features & Use Cases

  • Retrieve AlphaFold predictions and metadata (entryId, organism, sequence length) via the AlphaFold DB REST API.
  • Analyze confidence through pLDDT profiles and PAE matrices to identify reliably modeled regions.
  • Support single-protein queries or batch processing to generate summary datasets and facilitate comparative studies with experimental structures.

Quick Start

Run the alphafold_pipeline with a list of UniProt IDs to fetch predictions and generate pLDDT profiles.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

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Please help me install this Skill:
Name: scientific-alphafold-structures
Download link: https://github.com/nahisaho/satori/archive/main.zip#scientific-alphafold-structures

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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