scientific-encode-screen
CommunityEpigenome data integration with ENCODE/ChIP-Atlas
Authornahisaho
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This integration pipeline consolidates ENCODE REST API, SCREEN, and ChIP-Atlas queries to create a cohesive epigenome atlas for a gene or region, reducing manual cross-resource analysis.
Core Features & Use Cases
- ENCODE search: Query experiments, biosamples, and files to assemble relevant datasets.
- SCREEN cCREs: Retrieve candidate cis-regulatory elements and associated signals.
- ChIP-Atlas enrichment: Compute TF/histone enrichment for gene lists.
- End-to-end pipeline: Integrate results into a unified workflow for regulatory genomics analyses.
Quick Start
Call the encode_epigenome_pipeline with a gene name and biosample to generate integrated epigenome results.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
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Please help me install this Skill: Name: scientific-encode-screen Download link: https://github.com/nahisaho/satori/archive/main.zip#scientific-encode-screen Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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