scientific-metabolomics
CommunityEnd-to-end metabolomics analysis pipeline.
Authornahisaho
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Metabolomics data analysis often requires integrating preprocessing, statistical tests, multivariate modeling, and pathway enrichment, which is time-consuming and error-prone without a standardized workflow.
Core Features & Use Cases
- End-to-end pipeline including Pareto scaling, PLS-DA with VIP scores, permutation-based validation, and Fisher-exact pathway enrichment.
- Metabolite correlation networks and volcano/boxplot visualizations for differential metabolites.
- Real-world scenario: apply this to LC-MS metabolomics datasets to identify biomarker candidates and interpret metabolic pathways.
Quick Start
Run the end-to-end metabolomics analysis pipeline on your dataset to generate preprocessing, statistical results, enrichment, and network outputs.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: scientific-metabolomics Download link: https://github.com/nahisaho/satori/archive/main.zip#scientific-metabolomics Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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