scientific-metabolomics-databases
CommunityUnified metabolomics databases, rapid discovery
Authornahisaho
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Integrate HMDB, MetaCyc, and Metabolomics Workbench to enable cross-database metabolite identification, pathway mapping, and biomarker discovery, while leveraging RefMet naming and ToolUniverse SMCP tools for standardized analysis.
Core Features & Use Cases
- Unified access to HMDB, MetaCyc, and Metabolomics Workbench for cross-database metabolite annotation and pathway exploration.
- Metabolite identification and annotation from MS data across multiple databases with standardized naming.
- Pathway mapping, biomarker discovery, and context-aware interpretation using RefMet normalization and ToolUniverse SMCP integration.
- Use Case: When analyzing untargeted metabolomics data, identify metabolites by mass or name across databases and map them to pathways for biological interpretation.
Quick Start
Run the metabolomics workflow to identify metabolites by mass or name across HMDB, MetaCyc, and Metabolomics Workbench and map them to pathways with RefMet standardization.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: scientific-metabolomics-databases Download link: https://github.com/nahisaho/satori/archive/main.zip#scientific-metabolomics-databases Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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