scientific-metagenome-assembled-genomes
CommunityEnd-to-end MAG reconstruction and analysis.
Authornahisaho
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Provides an integrated pipeline to reconstruct metagenome-assembled genomes (MAGs) from metagenomic reads, including binning, quality assessment, taxonomic classification, dereplication, and annotation.
Core Features & Use Cases
- End-to-end MAG pipeline coordinating binning (MetaBAT2/CONCOCT/MaxBin2), quality assessment (CheckM2), taxonomy (GTDB-Tk), and dereplication (dRep) with annotation (Prokka/Bakta) to produce publishable MAG datasets.
- Use cases include reconstructing MAGs from environmental samples, enabling downstream phylogenomics, ecological analysis, and comparative genomics.
- TU integration via MGnify for MAG data search and retrieval.
Quick Start
Run mag_pipeline with your metagenome assembly FASTA and BAM file to generate MAGs and a comprehensive quality report.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: scientific-metagenome-assembled-genomes Download link: https://github.com/nahisaho/satori/archive/main.zip#scientific-metagenome-assembled-genomes Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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