scientific-pathway-enrichment
CommunityCross-database pathway enrichment for gene lists.
Authornahisaho
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Provides an integrated, cross-database pathway enrichment workflow that unifies ORA and GSEA analyses across KEGG, Reactome, GO, WikiPathways, and Pathway Commons for gene lists.
Core Features & Use Cases
- Cross-database ORA and GSEA analyses across five major pathway resources to annotate functional signals in a ranked gene list.
- Integrated results with downloadable CSVs and visualizations for quick interpretation and reporting.
- Use Case: researchers compare pathway activity across multiple databases to reconcile inconsistent annotations and prioritize targets.
Quick Start
Provide a ranked gene list to run the cross-database enrichment pipeline and obtain unified pathway results.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: scientific-pathway-enrichment Download link: https://github.com/nahisaho/satori/archive/main.zip#scientific-pathway-enrichment Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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