scientific-plant-biology

What problem does it solve?

Converges plant genomics and metabolic pathway data from Plant Reactome, TAIR, Phytozome, and Ensembl Plants into a single, coherent analysis pipeline to streamline cross-resource research.

Core Features & Use Cases

• Plant Reactome pathway search: quickly locate and interpret plant metabolic routes relevant to your study.
• TAIR gene information retrieval: fetch Arabidopsis gene details, annotations, and expression context.
• Ensembl Plants orthologs & comparative genomics: map genes across species to identify conserved functions.
• Phytozome gene families: explore gene families and annotations for cross-species comparisons.
• Use Case: identify candidate genes in Arabidopsis that have orthologs in crops for trait improvement.

Quick Start

Call plant_biology_pipeline with your gene query and a target species to generate integrated plant genomics results.