scientific-regulatory-genomics
CommunityRegulatory genomics for variant interpretation.
Authornahisaho
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Regulatory genomics information is scattered across RegulomeDB, ReMap, and 4D Nucleome data sources; this pipeline unifies scoring, TF binding mapping, and 3D genome analysis for noncoding variant interpretation.
Core Features & Use Cases
- RegulomeDB variant scoring to prioritize regulatory potential.
- ReMap TF binding mapping to identify transcription factor occupancy in regions of interest.
- 4D Nucleome based 3D genome structure analysis to contextualize regulatory variants.
- End-to-end regulatory-variant integration pipeline that outputs consolidated results for downstream interpretation.
Quick Start
Invoke regulatory_variant_pipeline with a list of variants to compute RegulomeDB scores, map TF bindings, and retrieve 4D Nucleome interactions.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
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Please help me install this Skill: Name: scientific-regulatory-genomics Download link: https://github.com/nahisaho/satori/archive/main.zip#scientific-regulatory-genomics Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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