scrna-embedding
CommunityLocal scVI embedding with batch-aware integration
Authorya-way
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Automates end-to-end local scVI-based embedding and batch-aware integration for single-cell datasets, producing a stable integrated AnnData for downstream analysis.
Core Features & Use Cases
- Local scVI-based latent embedding from raw-count data (h5ad) or 10x Matrix Market inputs.
- Batch-aware integration with optional batch keys, latent space export (X_scvi), and downstream plotting.
- Produces a reproducibility bundle including commands, environment, and checksums for traceable results.
Quick Start
Run scrna-embedding on a raw-count .h5ad or 10x matrix to generate a stable integrated artifact and latent embeddings.
Dependency Matrix
Required Modules
numpypandasscanpyanndatascvi-toolsscikit-learnmatplotlib
Components
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: scrna-embedding Download link: https://github.com/ya-way/cytoclaw-skills/archive/main.zip#scrna-embedding Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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