scrna-preprocessing-clustering
CommunityEffortless scRNA-seq preprocessing and clustering.
Authorzongtingwei
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Automatically preprocess scRNA-seq data to produce analysis-ready AnnData objects by performing quality control, normalization, variable gene selection, dimensionality reduction, neighborhood graph construction, and clustering.
Core Features & Use Cases
- QC metrics computation and filtering to identify high-quality cells
- Normalization and HVG selection for robust downstream analysis
- Dimensionality reduction (PCA/UMAP) and neighborhood graph construction
- Leiden clustering and export of an analysis-ready AnnData object
- Use Case: streamline end-to-end scRNA-seq preprocessing in scripted pipelines
Quick Start
Feed a raw or partially processed AnnData object to obtain a processed AnnData with QC metrics, HVGs, reduced dimensions, and Leiden clusters.
Dependency Matrix
Required Modules
None requiredComponents
references
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: scrna-preprocessing-clustering Download link: https://github.com/zongtingwei/Bioclaw_Skills_Hub/archive/main.zip#scrna-preprocessing-clustering Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
Agent Skills Search Helper
Install a tiny helper to your Agent, search and equip skill from 510,000+ vetted skills library on demand.