scvi-framework

What problem does it solve?

Streamlines cross-model workflow in scvi-tools by routing to the appropriate child skill (e.g., scvi-basic, scvi-scanvi, scvi-multivi) and enforcing a shared training contract.

Core Features & Use Cases

• Model-selection router: directs analysis to the appropriate scvi-* child skill based on data and goals.
• Shared contract enforcement: standardizes setup_anndata → train → get_latent_representation → save/load across models.
• Cross-cutting references & templates: links to common references, interoperability guidelines, and verification steps to ensure compatibility.
• Extensible with child skills: supports new scvi-* variants by overriding local concerns while reusing shared components.

Quick Start

Install scvi-tools and follow the framework's router to select a child model, run setup_anndata, train, and obtain latent representations.