scvi-hub-models
CommunityLoad pretrained scvi-tools models for hub mapping
Education & Research#multimodal#single-cell#scvi-tools#label-transfer#pretrained-models#scarches#hub-loading
Authortony-zhelonkin
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Browsing and loading pretrained scvi-tools models from the Hugging Face Hub to enable query-to-reference mapping, label transfer, and joint embedding analysis across single-cell datasets.
Core Features & Use Cases
- Model loading from Hugging Face Hub and minified vs full models
- Support for query-to-reference mapping with scArches
- Label transfer with scANVI and multi-sample analysis with MrVI
- Multiomics integration including TOTALVI and MultiVI
- Guidance on loading pretrained models and performing embedding analyses
Quick Start
Install dependencies, then load a pretrained scvi-tools model from Hugging Face Hub to perform a query-to-reference projection.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: scvi-hub-models Download link: https://github.com/tony-zhelonkin/SciAgent-toolkit/archive/main.zip#scvi-hub-models Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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