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sdrf:convert

Official

Choose and configure SDRF pipelines with validation.

Data & Analytics#validation#compatibility#pipeline#conversion#annotation#proteomics#sdrf
Authorbigbio
Version1.0.0
Installs0

System Documentation

What problem does it solve?

SDRF pipeline planning and compatibility validation for proteomics workflows, enabling users to select, configure, and validate SDRF-driven analysis pipelines.

Core Features & Use Cases

  • Guided pipeline selection for OpenMS, MaxQuant, DIA-NN, MSstats, NormalyzerDE, and quantms based on data type and study design.
  • SDRF compatibility checks to ensure required SDRF columns and formats before running analyses.
  • Conversion guidance and example commands to map SDRF to a chosen pipeline and validate outputs.

Quick Start

Provide your SDRF data and project context to receive a recommended pipeline and the required conversion steps.

Dependency Matrix

Required Modules

None required

Components

Standard package

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: sdrf:convert
Download link: https://github.com/bigbio/sdrf-skills/archive/main.zip#sdrf-convert

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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