search-encode
CommunityDiscover ENCODE genomic data efficiently and accurately.
Content & Communication#bioinformatics#metadata#genomics#data discovery#dataset retrieval#ENCODE#experiment search
Authorammawla
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This Skill enables users to locate and explore ENCODE Project genomic datasets with precision, saving time and reducing search errors.
Core Features & Use Cases
- Structured Data Discovery: Find experiments, files, or metadata based on assay type, organism, tissue, and targets.
- Faceted Exploration: Preview data availability using filters like biosample type, assay, and organ to guide targeted searches.
- Detailed Retrieval: Access specific experiment metadata, download analysis-ready files, and compare experimental parameters across samples.
- Use Case: A researcher wants to identify human liver H3K27ac ChIP-seq experiments with high-quality, visualization-ready peak files, then retrieve associated data files for downstream analysis.
Quick Start
Start by exploring available assays in a specific tissue and then refine your search to find relevant experiments and files.
Dependency Matrix
Required Modules
None requiredComponents
references
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: search-encode Download link: https://github.com/ammawla/encode-toolkit/archive/main.zip#search-encode Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
Agent Skills Search Helper
Install a tiny helper to your Agent, search and equip skill from 471,000+ vetted skills library on demand.