sequence-and-format-io
CommunityReliable sequence I/O: parse, convert, validate.
Authorzongtingwei
Version1.0.0
Installs0
System Documentation
What problem does it solve?
This workflow provides a reliable foundation for parsing common biological sequence formats, converting between formats, handling compressed inputs, and performing interval-aware validation to ensure clean data for downstream analyses.
Core Features & Use Cases
- Sequence parsing and format-aware I/O for FASTA, FASTQ, BED, GTF, BAM, and related files
- Safe conversion between formats with preservation of metadata and coordinate information
- Compression handling for gzip/bzip2/xz inputs with consistent validation
- Interval-aware checks to ensure coordinate consistency and build integrity across pipelines
- Lightweight QC artifacts and summaries to support reproducibility in omics analyses
Quick Start
Run a Python-based workflow that parses a FASTA/FASTQ file, validates coordinates, and outputs a cleaned FASTA/CSV summary.
Dependency Matrix
Required Modules
None requiredComponents
references
💻 Claude Code Installation
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Please help me install this Skill: Name: sequence-and-format-io Download link: https://github.com/zongtingwei/Bioclaw_Skills_Hub/archive/main.zip#sequence-and-format-io Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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