shap

Generate SHAP values and beeswarm plots to explain model predictions.

Updated Aug 23, 2026
One-click install
npx skills add https://github.com/Rowtion/Bioclaw --skill shap-rowtion
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: shap
Source: https://github.com/Rowtion/Bioclaw/tree/main/scientific-skills/shap
Command: npx skills add https://github.com/Rowtion/Bioclaw --skill shap-rowtion

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill requires shap, scikit-learn, xgboost, lightgbm, tensorflow, torch, matplotlib, pandas, numpy, and includes scripts (resource) and references (resource) components.

What problem does it solve?

This Skill demystifies machine learning models by explaining their predictions, identifying key drivers, and revealing how features influence outcomes, making AI transparent and trustworthy.

Core Features & Use Cases

  • Model Interpretability: Explain any model's predictions using SHAP (SHapley Additive exPlanations).
  • Feature Importance: Quantify the impact of each feature on model outputs.
  • Prediction Breakdown: Visualize why a specific prediction was made.
  • Use Case: A data scientist trains a complex XGBoost model for customer churn prediction. They use this Skill to understand which customer attributes (e.g., contract duration, monthly charges) are most influential in predicting churn, enabling targeted retention strategies.

Quick Start

Use the shap skill to generate a beeswarm plot for the provided SHAP values and test data.

Frequently Asked Questions about shap

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I explain feature importance in my XGBoost model?

You can explain feature importance in your XGBoost model by calculating SHAP values. This Skill uses TreeExplainer to quantify the impact of each feature on model outputs, allowing you to identify key drivers behind predictions.

Can I use SHAP to explain deep learning models built with TensorFlow?

Yes, you can use SHAP to explain deep learning models built with TensorFlow. This Skill utilizes DeepExplainer to break down how individual features influence predictions in complex neural networks, making AI transparent.

What is the best way to visualize why a specific prediction was made?

The best way to visualize why a specific prediction was made is by generating SHAP plots like beeswarm charts. This Skill creates visual prediction breakdowns showing exactly how each feature contributes to a specific model output.

Does this SHAP approach work with scikit-learn and LightGBM models?

Yes, this SHAP approach works with scikit-learn and LightGBM models. It supports tree-based, linear, and black-box models through specialized explainers like TreeExplainer and KernelExplainer for comprehensive interpretability.

How do I debug machine learning model fairness using SHAP values?

You debug machine learning model fairness using SHAP values by analyzing how individual features influence outcomes across different groups. This Skill facilitates fairness analysis by revealing feature impacts and demystifying model predictions.

When should I use KernelExplainer for model interpretability?

You should use KernelExplainer for model interpretability when working with black-box models that lack specialized explainers. It provides SHapley Additive exPlanations for any model type, ensuring AI transparency across unsupported architectures.