similar-protein-retrieval
CommunityFind protein homologs by structure.
AuthorPharMolix
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Retrieve proteins that are similar in either structure or sequence to a given query, enabling rapid hypothesis generation about function, evolution, and relationships across protein families.
Core Features & Use Cases
- Structure-based search: identify proteins with highly similar folds using FoldSeek.
- Sequence-based search: discover homologs via sequence similarity (MSA/QC results).
- Use Case: start from a UniProt or PDB identifier to find related proteins for functional annotation and experimental planning.
Quick Start
Provide a protein identifier (UniProt, PDB, or FASTA) to run a similarity search and view results.
Dependency Matrix
Required Modules
None requiredComponents
references
💻 Claude Code Installation
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Please help me install this Skill: Name: similar-protein-retrieval Download link: https://github.com/PharMolix/OpenBioMed/archive/main.zip#similar-protein-retrieval Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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