Single-Cell Foundation Models Skills Index

The recommended single-cell foundation model workflow follows a profile, validate, run, and interpret approach to guide data processing and model evaluation strategies across single-cell experiments.

You can find species support and hardware considerations for single-cell foundation models by accessing the per-model reference cards available within the SCFM Skills Index.

To plan model selection and data workflows for single-cell experiments, reference the available skills and per-model I/O contracts within the SCFM Skills Index to guide your evaluation strategies.

You can find extended technical context and examples for single-cell foundation models by accessing the in-depth documentation located under the _docs directory within the index.