smri-skill

Plan structural MRI preprocessing workflows and delegate execution to tool skills.

78|3|Updated Mar 25, 2026
One-click install
npx skills add https://github.com/CUHK-AIM-Group/NeuroClaw --skill smri-skill
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: smri-skill
Source: https://github.com/CUHK-AIM-Group/NeuroClaw/tree/main/skills/smri-skill
Command: npx skills add https://github.com/CUHK-AIM-Group/NeuroClaw --skill smri-skill

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

Plan structural MRI workflows and delegate execution to tool skills, enabling reproducible, auditable neuroimaging pipelines without embedding implementation details.

Core Features & Use Cases

  • Plans WHAT to do for input types (DICOM/NIfTI/BIDS) and modalities, and delegates to tool skills via claw-shell.
  • Generates a deterministic execution plan with steps, outputs, runtimes, and risks, awaiting user confirmation before execution.
  • Supports outputs like skull-stripped brain maps, tissue maps, cortical surfaces, and ROI statistics, and saves results in a clean folder structure.

Quick Start

Provide an input MRI dataset and ask to generate an execution plan for a T1w preprocessing and optional FreeSurfer recon-all, then execute after confirmation.

Frequently Asked Questions about smri-skill

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I plan a structural MRI preprocessing workflow for T1w images?

To plan structural MRI preprocessing, provide a T1w dataset and request an execution plan. The system generates a deterministic sequence for brain extraction, bias correction, and MNI registration, awaiting your confirmation before delegating execution.

What outputs can I expect from a structural MRI preprocessing pipeline?

Structural MRI preprocessing yields skull-stripped brain masks, tissue segmentation maps, cortical surfaces, ROI statistics, and DICOM exports. Results are organized in a clean folder structure for reproducible neuroimaging analysis.

How do I execute FreeSurfer recon-all within a structural MRI workflow?

You can execute FreeSurfer recon-all by requesting it as an optional step in your T1w preprocessing plan. The system delegates the execution to tool skills via claw-shell, ensuring safe and auditable operations after your explicit confirmation.

Do I need claw-shell to run structural MRI processing tasks?

Yes, claw-shell orchestration is required to delegate execution to tool skills. This ensures structural MRI processing tasks are executed safely and auditably, with explicit user confirmation required before running each numbered plan step.

Why does structural MRI planning require explicit user confirmation before execution?

Explicit user confirmation before execution ensures safe, auditable neuroimaging operations. The planning phase generates a numbered list of steps, outputs, runtimes, and risks, requiring your approval before delegating any task to tool skills.