spatial-domain-detection
CommunityIdentify spatial domains with SpaGCN
Authorchenyhvvvv
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Identify spatial domains in spot-level spatial transcriptomics data by integrating gene expression, spatial coordinates, and histology features using SpaGCN.
Core Features & Use Cases
- SpaGCN-based detection to delineate tissue domains in Visium-like datasets.
- Integrates gene expression, coordinates, and optionally H&E histology to improve domain calls.
- Use Case: compare domain architectures across multiple tissue slices to study architecture and pathology.
Quick Start
Run SpaGCN on your Visium slice to compute and assign spatial_domain labels for each spot.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: spatial-domain-detection Download link: https://github.com/chenyhvvvv/STAT-agent/archive/main.zip#spatial-domain-detection Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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