structure-alignment-analysis
CommunityAlign and compare protein structures with PyMOL.
AuthorANaka
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Comparing protein structures and assessing conformational differences can be time-consuming. This skill provides workflows to align structures, compute RMSD, and visualize differences in PyMOL, enabling quick structural insights.
Core Features & Use Cases
- Automates structural alignment using common PyMOL commands (align, cealign, and super) for pairwise and multi-structure comparisons.
- Computes RMSD values (global and CA-only) to quantify similarity and track structural changes.
- Visualizes differences by coloring conserved vs variable regions and highlighting alignment paths for publication-ready figures.
Quick Start
Load two protein structures in PyMOL and run an alignment to visualize the structural differences.
Dependency Matrix
Required Modules
None requiredComponents
Standard package💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: structure-alignment-analysis Download link: https://github.com/ANaka/claudemol/archive/main.zip#structure-alignment-analysis Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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