study-file-organization

Scaffold standardized study directories with Python and Git workflows.

Updated Jun 4, 2025

Search Tags:#project management #git workflow #reproducibility #file structure #study organization #research studies

Ready to run

npx skills add https://github.com/expectedparrot/vernon --skill study-file-organization

💬 Prompt for ChatGPT / Claude Chat▼

Please help me install this Agent Skill.
Skill: study-file-organization
Source: https://github.com/expectedparrot/vernon/tree/main/macaw/ep-agent/skills/study-file-organization
Command: npx skills add https://github.com/expectedparrot/vernon --skill study-file-organization

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes scripts (resource) and references (resource) and assets (resource) components.

What problem does it solve?

This Skill provides a standardized and efficient system for organizing files, directories, and Git workflows when conducting research studies, ensuring consistency and reproducibility.

Core Features & Use Cases

Standardized Directory Structure: Enforces a consistent layout for topics and studies within a session.
Automated Project Scaffolding: Uses a Python script to generate the necessary file structure for new studies.
Git Workflow Guidance: Details best practices for Git initialization, commits, and managing dependencies.
Report Generation Standards: Outlines requirements for CSS styling and Markdown formatting for study reports.
Use Case: When starting a new research project on agent-based modeling, this Skill ensures all data, scripts, and reports are organized logically, making collaboration and future reference straightforward.

Quick Start

Use the create_study_project.py tool to scaffold a new study within the sessions/topic_alias/ directory.

Frequently Asked Questions about study-file-organization

High-intent search queries and answers about installing and using this skill.

FAQPage Schema

How do I organize research study files for reproducibility?▼

Automate research study file organization by running the create_study_project.py script to scaffold new studies within the sessions/topic_alias/ directory. This automatically generates the necessary directory layout and file structure for your project.

What is the best way to manage Git workflows for research studies?▼

Use Git-mediated file interactions for all research study updates by initializing Git in your project directory and committing changes regularly. This workflow maintains reproducibility and tracks modifications to your study data, scripts, and reports.

Does this file structure approach work for agent-based modeling research?▼

Yes, this standardized directory structure supports agent-based modeling research by logically organizing data, scripts, and reports. It enforces a consistent layout for topics and studies, making collaboration and future reference straightforward.

How do I generate standardized reports for research studies?▼

Generate standardized research study reports by following the specific CSS styling and Markdown formatting requirements outlined by the organization system. This ensures your study reports maintain a consistent and reproducible presentation format.