What problem does it solve? Operating the SUSHI framework at FGCZ requires knowing web workflows, CLI syntax, server deployment steps, and debugging procedures scattered across systems. This Skill consolidates user operations, admin deployment, and troubleshooting knowledge for SUSHI into one operational guide. ## Core Features & Use Cases - Job Submission & Monitoring: Submit analysis jobs via the SUSHI web interface or the sushi_fabric CLI, create dataset and parameterset TSV files, and track job status through SLURM. - Server Administration: Deploy production, demo, course, and test SUSHI instances, manage the Python Job Manager daemon, and administer the MySQL database. - Troubleshooting & Integration: Diagnose failed jobs, B-Fabric registration errors, and gStore copy issues using documented log locations and recovery procedures. - Use Case: A bioinformatician needs to run FastQC on a new RNA-seq dataset for project p1535. The Skill provides the exact sushi_fabric command, dataset TSV format, and monitoring commands to submit and verify the job. ## Quick Start Ask the agent to submit a FastQC job to SUSHI for project 1535 using a dataset TSV file and show how to monitor its status.
