thermo-free-energy-and-reporting

Convert electronic-structure outputs into comparable thermodynamic and free-energy summaries.

13|1|Updated Nov 27, 2025
One-click install
npx skills add https://github.com/q734738781/CatMaster --skill thermo-free-energy-and-reporting
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: thermo-free-energy-and-reporting
Source: https://github.com/q734738781/CatMaster/tree/main/skills/thermo-free-energy-and-reporting
Command: npx skills add https://github.com/q734738781/CatMaster --skill thermo-free-energy-and-reporting

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

Convert raw electronic-structure outputs and mixed energy conventions into audit-ready thermodynamic comparisons so that catalyst candidates can be fairly ranked and interpreted.

Core Features & Use Cases

  • Consistent normalization: Enforces a single reference-state convention and explicit unit reporting across compared entries.
  • Validation guidance: Advises exclusion of unconverged or pathological structures and highlights required corrections for free-energy estimates.
  • Auditable outputs: Produces comparison-ready tables with artifact paths, value definitions, and caveats suitable for manuscript or report inclusion.
  • Use Case: Prepare a ranked table of adsorption free energies for a set of slab+adsorbate simulations with clear reference states and correction notes.

Quick Start

Use the thermo-free-energy-and-reporting skill to convert validated electronic energies and corrections into a comparison-ready free-energy table with explicit units and reference conventions.

Frequently Asked Questions about thermo-free-energy-and-reporting

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I normalize adsorption free energies from slab simulations for catalyst ranking?

Normalize adsorption free energies by enforcing a single reference-state convention and explicit unit reporting across slab, adsorbed, and gas-phase entries to produce a comparison-ready ranked table.

What is the best way to report thermodynamic corrections for electronic-structure outputs?

Report thermodynamic corrections by applying validated electronic energies and required corrections to generate auditable tables with artifact paths, value definitions, and caveats suitable for manuscript inclusion.

Can I compare catalyst pathway energies if my simulations use mixed reference states?

Compare pathway energies by converting mixed electronic-structure conventions into a single fixed reference-state convention with explicit units, enabling fair thermodynamic comparisons and candidate ranking.

Do I need converged electronic energies before calculating free-energy summaries?

Validated converged electronic energies are required to calculate free-energy summaries, as unconverged or pathological structures should be excluded to ensure accurate thermodynamic normalization.

How to handle unconverged structures when normalizing catalyst thermodynamic data?

Exclude unconverged or pathological structures during normalization and highlight required corrections for free-energy estimates to ensure audit-ready thermodynamic comparisons and accurate catalyst ranking.