Store and query genomic variant data from indexed VCF or BCF files.
npx skills add https://github.com/dralkh/seerai --skill tiledbvcf-dralkh
Please help me install this Agent Skill. Skill: tiledbvcf Source: https://github.com/dralkh/seerai/tree/main/skills/tiledbvcf Command: npx skills add https://github.com/dralkh/seerai --skill tiledbvcf-dralkh
TileDB-VCF solves the problem of storing, querying, and exporting large genomic variant datasets efficiently without repeatedly merging bulky VCF files or sacrificing query performance. It is designed for researchers who need fast access to cohort-scale variant data across regions, samples, and annotations.
Use the tiledbvcf skill to create a dataset from indexed single-sample VCF files, query a genomic region, and export the matching variants for analysis.
High-intent search queries and answers about installing and using this skill.
TileDB-VCF stores and queries genomic variant data at scale by ingesting single-sample VCF or BCF files, allowing fast parallel region queries without repeatedly merging bulky VCF files.
Storing population genomics variant data in a TileDB-VCF dataset allows incremental sample addition from indexed single-sample VCF or BCF files, enabling cohort scalability without rebuilding the entire dataset.
TileDB-VCF supports indexed single-sample BCF inputs and configurable cloud-storage access, enabling efficient cohort-scale variant queries and analysis on cloud-hosted datasets.
Export genomic variants by querying a 1-based genomic region and selected attributes, then exporting the matching subset back to VCF or other analysis-friendly outputs for downstream population genomics tools.
Ingesting variant data requires single-sample indexed VCF or BCF files, 1-based genomic regions for querying, and configurable memory or cloud-storage access for efficient population genomics analysis.
Victory-HugoQuery Ensembl genomic data via REST API for genes, sequences, variants, and coordinates.
ovachieverRead and write SAM/BAM/CRAM alignments and VCF/BCF variants using pysam.
Estrella-231Ingest indexed VCF/BCF files into TileDB sparse arrays for region-based variant queries.
qinyan-aiIngest and query VCF/BCF genomic variant data with TileDB-VCF.
