Ingest and query genomic variant data from VCF files.
npx skills add https://github.com/Hung-3008/agusta --skill tiledbvcf-hung-3008
Please help me install this Agent Skill. Skill: tiledbvcf Source: https://github.com/Hung-3008/agusta/tree/main/.agents/skills/tiledbvcf Command: npx skills add https://github.com/Hung-3008/agusta --skill tiledbvcf-hung-3008
TileDB-VCF enables efficient ingestion, storage, and retrieval of genomic variant data (VCF/BCF) at scale, supporting incremental sample addition and fast, parallel queries for cohort analyses.
Install TileDB-VCF, create a dataset, ingest a single-sample VCF, and perform a region query to validate setup.
High-intent search queries and answers about installing and using this skill.
Genomic VCF ingestion at scale is handled through parallel processing of single-sample VCFs. TileDB-VCF supports required index files and incremental sample addition, allowing you to add new samples without reprocessing existing cohort data.
Region-based variant queries across many samples are executed efficiently using TileDB-VCF. You can query specific genomic regions across large cohorts and export the resulting variant data directly to VCF or TSV formats.
Cloud-backed genomic datasets are fully supported. TileDB-VCF operates on local storage or cloud platforms like S3, Azure, and GCS, enabling scalable storage and querying of variant data without local downloads.
Reprocessing existing data is not required when adding new samples. TileDB-VCF supports incremental sample addition, allowing you to ingest new single-sample VCFs into an existing dataset without reprocessing previous data.
Exporting queried genomic variant data is supported in VCF and TSV formats. After performing region-based queries across your cohort, you can export the results directly for use in downstream bioinformatics pipelines.
shushuznIngest VCF/BCF files into TileDB sparse arrays for genomic variant queries.
OwnLabAIIngest and query genomic variant data using TileDB-VCF.
Lord1EgyptIngest VCF/BCF files into TileDB sparse arrays for genomic region queries.
SciMate-AIStore, ingest, and query genomic variant data with TileDB-VCF.
