trajectory-lineage
CommunityMap cellular trajectories from pseudotime.
Authorzongtingwei
Version1.0.0
Installs0
System Documentation
What problem does it solve?
Infers pseudotime, lineage branches, and state transitions from single-cell data.
Core Features & Use Cases
- End-to-end trajectory analysis with root and branch specification using Python and Scanpy.
- Output pseudotime assignments, lineage states, and dynamic gene programs suitable for downstream interpretation.
- Use Case: study developmental progression in a scRNA-seq dataset to reveal lineage relationships and gene modules along trajectories.
Quick Start
Run a Scanpy-based workflow on a processed single-cell object to infer pseudotime and lineage states.
Dependency Matrix
Required Modules
None requiredComponents
references
💻 Claude Code Installation
Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.
Please help me install this Skill: Name: trajectory-lineage Download link: https://github.com/zongtingwei/Bioclaw_Skills_Hub/archive/main.zip#trajectory-lineage Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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