Access UCSC genome annotations, sequences, and track data via REST API.
npx skills add https://github.com/ammawla/encode-toolkit --skill ucsc-browser
Please help me install this Agent Skill. Skill: ucsc-browser Source: https://github.com/ammawla/encode-toolkit/tree/main/plugin/skills/ucsc-browser Command: npx skills add https://github.com/ammawla/encode-toolkit --skill ucsc-browser
This Skill enables users to programmatically access UCSC Genome Browser's extensive genomic annotations, sequences, and track data to support genome research and analysis workflows.
Query the UCSC API to retrieve cCRE annotations overlapping a given genomic locus and fetch the corresponding DNA sequence for downstream motif analysis.
High-intent search queries and answers about installing and using this skill.
Fetch cCRE annotations, TF binding clusters, conservation scores, and regulatory features for a genomic region by specifying the genome assembly and coordinates in your UCSC API request parameters.
You can fetch DNA sequences and reverse complements from the UCSC API for specified genomic coordinates to support motif discovery, variant analysis, or CRISPR guide design workflows.
No authentication is required to access the UCSC REST API at api.genome.ucsc.edu, which streamlines programmatic retrieval of genome annotations, sequences, and track data for research workflows.
The UCSC API provides access to cCRE annotations, transcription factor binding clusters, conservation scores, DNA sequences, and track data for regulatory feature analysis within user-defined genomic regions.
jaechang-hitsRetrieve genomic sequences and annotations from the UCSC Genome Browser REST API.
JosephWoodallRetrieve and apply JASPAR transcription factor binding profiles to scan DNA sequences for regulatory motifs.
google-deepmindFetch UCSC phyloP and phastCons conservation metrics with TFBS annotations for genomic coordinates.
jackspaceQuery the Ensembl REST API for gene, sequence, and variant data.
