unibind-database
OfficialQuery validated TF–DNA binding data
Education & Research#genomics#dataset discovery#transcription factors#unibind#tf-dna binding#bed fasta
Authorgoogle-deepmind
Version1.0.0
Installs0
System Documentation
What problem does it solve?
It helps you retrieve experimentally validated transcription factor (TF) binding site data without manually navigating and downloading scattered resources.
Core Features & Use Cases
- Structured UniBind queries: List available species, collections, cell lines, and TFs, then narrow down datasets by filters like species, TF name, cell line, collection, data source, and p-value constraints.
- Dataset inspection and retrieval: Fetch dataset metadata (dataset details) for downstream analysis planning.
- Bulk coordinate downloads: Download TF binding site coordinates as BED or FASTA files for local computational workflows.
- Use case: You want validated binding sites for CTCF in Homo sapiens datasets from ENCODE, then download BED files for intersection with your own genomic tracks.
Quick Start
Use the UniBind wrapper to list species by running: uv run <SKILL DIR>/scripts/unibind_api.py list_species.
Dependency Matrix
Required Modules
scienceskillscommon
Components
scripts
💻 Claude Code Installation
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Please help me install this Skill: Name: unibind-database Download link: https://github.com/google-deepmind/science-skills/archive/main.zip#unibind-database Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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