uniprot-query

Community

Query UniProt data: proteins and metadata

AuthorPharMolix
Version1.0.0
Installs0

System Documentation

What problem does it solve?

This tool enables researchers to programmatically retrieve protein information from the UniProt knowledgebase, including metadata, sequences, and search results, reducing manual lookup time and ensuring consistent data.

Core Features & Use Cases

  • Look up proteins by UniProt accession to obtain metadata, function, domains, PTMs, and cross-references.
  • Search proteins by gene name, organism, keywords, or disease to assemble curated protein sets.
  • Retrieve and export structured metadata and sequences for downstream analysis or reporting.
  • Use Case: Build a quick report for a set of targets by fetching metadata and sequence length in one go.

Quick Start

Provide a UniProt accession (e.g., P00533) or a search query (e.g., "gene_exact:EGFR AND organism_id:9606") to retrieve protein data and a readable report.

Dependency Matrix

Required Modules

None required

Components

references

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: uniprot-query
Download link: https://github.com/PharMolix/OpenBioMed/archive/main.zip#uniprot-query

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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