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vdb

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Query genomic datasets with ease via VirtualDB.

Data & Analytics#sql#duckdb#datasets#vdb#genomic#virtualdb#labretriever
AuthorcmatKhan
Version1.0.0
Installs0

System Documentation

What problem does it solve?

labretriever's VirtualDB provides a unified SQL interface over genomic and transcriptomic datasets hosted on HuggingFace, enabling researchers to query, explore, and compare datasets without manual data wrangling.

Core Features & Use Cases

  • Discover datasets via list_datasets and inspect schemas with describe_dataset and describe_dataset_meta.
  • Retrieve semantic metadata with get_column_metadata and provenance tags via get_tags.
  • Execute SQL queries against the two views named after the dataset and its _meta counterpart using vdb.query, and reproduce MCP results in Python when needed.

Quick Start

Connect to the MCP server and run a sample query using vdb.query.

Dependency Matrix

Required Modules

None required

Components

references

💻 Claude Code Installation

Recommended: Let Claude install automatically. Simply copy and paste the text below to Claude Code.

Please help me install this Skill:
Name: vdb
Download link: https://github.com/cmatKhan/labretriever/archive/main.zip#vdb

Please download this .zip file, extract it, and install it in the .claude/skills/ directory.
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