Hiroyuki Odake
Community@dakesan · Tokyo
Biology, Bioinformatics, AI Biology.
Agent Skills by Hiroyuki Odake
Showing 34 vetted skills indexed across 3 GitHub repositories.
dakesaninbox-processor
Classify and extract actionable items from inbox files into workflow artifacts.
dakesanexperiment-report
Generate and refine lab notebook reports with optional PDF export.
dakesanhypothesis-driven
Refines post-experiment hypotheses into testable predictions and verification plans for bioinformatics workflows.
dakesanlab-notebook
Your tagline here
dakesanresearch-project
Initialize a standardized bioinformatics research project scaffold with steering, notebooks, and data folders.
dakesansequence-io
Read, write, and manipulate FASTA, GenBank, and FASTQ biological sequence files.
dakesanvcf-toolkit
Analyze VCF/BCF variant files to compute statistics and filter variants.
dakesanbam-toolkit
Analyze BAM/SAM/CRAM files for reads, indels, and coverage with JSON output.
dakesanblast-search
Execute NCBI BLAST searches via BioPython and output JSON results.
dakesancosmic-toolkit
Query COSMIC Cancer Gene Census to annotate gene symbols and return JSON.
dakesanigv-integration
Generate IGV PNG snapshots from multiple BAM files and BED-defined regions.
dakesanblat-api-searching
Runs local BLAT searches for DNA sequences using hg38 or CHM13 references.
dakesanpptx
Extract and index content from PPTX files for RAG pipelines.
dakesandocx
Create, edit, and analyze Word documents with tracked changes and comments.
dakesanliterature-review
Automate systematic literature reviews across multiple databases with verified citations.
dakesanhypothesis-generation
Generate testable scientific hypotheses with mechanistic explanations and experimental predictions.
dakesanskill-creator
Create or update Claude Skills with YAML frontmatter and SKILL.md content.
dakesanmetabolomics-workbench-database
Query NIH Metabolomics Workbench studies, metabolites, and RefMet nomenclature via REST API.
dakesanbenchling-integration
Automate Benchling registry, inventory, ELN, and workflow management via Python SDK or REST API.
dakesannetworkx
Create, analyze, and visualize graphs with NetworkX.
dakesanscientific-brainstorming
Generate research hypotheses and explore interdisciplinary connections through structured brainstorming techniques.
dakesankegg-database
Query KEGG databases and retrieve pathway entries in JSON or KGML formats.
dakesanresearch-lookup
Perform research lookups with automatic model selection and cited outputs.
dakesanzinc-database
Search the ZINC database by SMILES and retrieve compound data.