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experiment-report

Generate and refine lab notebook reports with optional PDF export.

Updated Aug 23, 2026
Search Tags:#refinement#pandoc#typst#report-generation#data-organization#research-report#lab-notebook
One-click install
npx skills add https://github.com/dakesan/bioinformatics-research-plugins --skill experiment-report
Or copy as Structured Prompt for Agent▼
Please help me install this Agent Skill.
Skill: experiment-report
Source: https://github.com/dakesan/bioinformatics-research-plugins/tree/main/plugins/experiment-report/skills/experiment-report
Command: npx skills add https://github.com/dakesan/bioinformatics-research-plugins --skill experiment-report

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill includes scripts (resource) and references (resource) components.

What problem does it solve?

This skill automates end-to-end generation and refinement of scientific reports by converting multiple lab notebooks into a cohesive, well-structured markdown document and optionally exporting to PDF.

Core Features & Use Cases

  • Report generation: Generate integrated reports from one or more lab notebooks using the provided init_report.py workflow.
  • Report refinement: Improve report quality using provenance-grounded criteria from the references and refinement guide.
  • Export options: Export final reports to PDF or Typst formats via the included export script, enabling publication-ready outputs.

Quick Start

Run the report-generation workflow from your project root using the /research-report trigger, then run /research-refine to improve the result.

Frequently Asked Questions about experiment-report

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I generate a research report from multiple lab notebooks?▼

Generate a research report from multiple lab notebooks by running the report-generation workflow from your project root using the /research-report trigger. The skill coordinates script tools to convert single or multi-notebook projects into a cohesive markdown document.

Can I export my lab notebook report to PDF?▼

Yes, you can export your lab notebook report to PDF. The skill supports optional PDF export using Typst or Pandoc-based export scripts, enabling publication-ready outputs directly from the generated markdown document.

How do I refine and improve the quality of a generated lab report?▼

Refine a generated lab report by running the /research-refine command after generation. The skill applies provenance-grounded criteria from built-in references and a refinement guide to improve report quality and accuracy.

Does the report generation workflow support Typst formatting?▼

Yes, the report generation workflow supports Typst formatting. It includes optional Typst-based export support alongside Pandoc, allowing you to output final integrated reports in Typst or PDF formats.

What is the best way to convert lab notebooks into a structured markdown document?▼

The best way to convert lab notebooks into a structured markdown document is using the init_report.py script workflow. It performs pre-generation checks and maps notebook data using reference criteria to ensure cohesive output.

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