Junyang Deng
Community@damarisdeng · Boston, MA
Computational Biology @ Harvard Bioinformatics @ CUHKSZ
Agent Skills by Junyang Deng
Showing 11 vetted skills indexed across 1 GitHub repositories.
DamarisDengsync-change
Align pipeline documentation after structural changes to stages or outputs.
DamarisDengcompile-and-review
Compile LaTeX papers with pdflatex and bibtex, retry errors, and run self-review.
DamarisDengstatistical-analysis
Executes statistical analyses from research_questions.json to produce analysis_results.json.
DamarisDengliterature-review
Automate time-boxed literature searches and generate BibTeX bibliographies via Semantic Scholar and PubMed APIs.
DamarisDenggenerate-figures
Generate publication-quality figures and LaTeX tables from analysis_results.json.
DamarisDengacquire-data
Read a download manifest and acquire dataset files into a target directory.
DamarisDenggenerate-research-questions
Generate ranked PICO/PECO research questions from profiled dataset JSON files.
DamarisDengscore-and-rank
Score and rank research questions by blending data feasibility with literature signals.
DamarisDengwrite-paper
Generates a complete JAMA Network Open manuscript in LaTeX from analysis outputs.
DamarisDengload-and-profile
Scan folders for CSV and XLSX files and generate profile.json and variable_types.json.
DamarisDengorchestrator
Coordinate end-to-end paper-generation workflows from data ingestion to final manuscript.