Galaxy Project
Official@galaxyproject
Galaxy is an open, web-based platform for data-intensive research.
Agent Skills by Galaxy Project
Showing 11 vetted skills indexed across 2 GitHub repositories.
galaxyprojectrelease
Bump version, build artifacts, and publish galaxy-mcp to PyPI.
galaxyprojecttool-dev
Route Galaxy tool-development tasks to creation or update sub-skills.
galaxyprojectnf-to-galaxy
Route Nextflow conversion tasks to the appropriate Galaxy sub-skill.
galaxyprojectgalaxy-integration
Automate Galaxy tool discovery, .ga validation, and workflow testing via BioBlend and MCP.
galaxyprojecthub-news-posts
Generate Galaxy Hub news posts with structured templates and frontmatter.
galaxyprojectGalaxy Tool Creation Skill
Converts CLI tools and Nextflow processes into Galaxy XML wrappers with tests and Planemo validation.
galaxyprojectnf-process-to-galaxy-tool
Convert a Nextflow process into a Galaxy tool XML wrapper.
galaxyprojectnf-pipeline-to-galaxy-workflow
Convert Nextflow pipelines into equivalent Galaxy workflows with conversion plans.
galaxyprojectnf-subworkflow-to-galaxy-workflow
Convert Nextflow subworkflows into reusable Galaxy workflows.
galaxyprojectgalaxy-mcp-reference
Document Galaxy MCP server functions for histories, datasets, tools, and workflows.
galaxyprojectjupyterlite-galaxy
Access and upload Galaxy datasets in JupyterLite notebooks using gxy.
Frequently Asked Questions About Galaxy Project
FAQPage SchemaWhat specific research tasks does the Galaxy Project enable?▼
The platform enables the conversion of Nextflow processes and pipelines into Galaxy-compatible XML wrappers. It facilitates data-intensive research by providing structured environments for tool discovery, dataset validation, and the generation of research news posts with standardized frontmatter.
Which personas benefit most from these research capabilities?▼
Bioinformaticians, computational biologists, and research software engineers benefit from these capabilities. The platform is designed for scientists who need to migrate existing command-line research processes into a web-based, reproducible environment without manual re-implementation of complex analysis logic.
What are the prerequisites for migrating Nextflow pipelines to Galaxy?▼
Migration requires the source Nextflow process or pipeline files and the Planemo suite for validation. Users must utilize the provided conversion sub-skills to map Nextflow logic into Galaxy XML wrappers, ensuring that all dependencies and test cases are correctly defined for the target environment.