Route Nextflow conversion tasks to the appropriate Galaxy sub-skill.
npx skills add https://github.com/galaxyproject/galaxy-skills --skill nf-to-galaxy
Please help me install this Agent Skill. Skill: nf-to-galaxy Source: https://github.com/galaxyproject/galaxy-skills/tree/main/nf-to-galaxy Command: npx skills add https://github.com/galaxyproject/galaxy-skills --skill nf-to-galaxy
Router skill for directing Nextflow conversions to the appropriate Galaxy sub-skills, streamlining the migration from Nextflow to Galaxy.
Start by identifying what you are converting (process, subworkflow, or pipeline) and then invoke the nf-to-galaxy skill to route to the corresponding sub-skill. See the linked SKILL.md in each sub-skill for detailed guidance.
High-intent search queries and answers about installing and using this skill.
Nextflow to Galaxy conversion routes tasks to specialized sub-skills based on scope, directing single processes, subworkflows, or complete pipelines to the appropriate handler for structured migration.
Migrating a Nextflow process targets a single tool conversion, while a full pipeline migration handles the entire workflow. This router skill directs single processes, subworkflows, and complete pipelines to distinct sub-skills for proper execution.
Start a subworkflow migration by identifying your conversion target and invoking the router skill, which directs subworkflow conversions to the nf-subworkflow-to-galaxy-workflow sub-skill to guide execution steps and prerequisites.
Yes, you need to prepare prerequisites before converting Nextflow to Galaxy. The routing skill provides structure, prerequisites, and decision points to minimize misconfigurations and ensure proper planning during the workflow migration.
Route a Nextflow process to a single Galaxy tool conversion when your migration target is an isolated process rather than a subworkflow or complete pipeline, directing the task to the nf-process-to-galaxy-tool sub-skill.
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