HolobiomicsLab
Official@holobiomicslab · France
Offers a comprehensive suite of computational biology, cheminformatics, and scientific research integration capabilities for high-throughput data analysis and laboratory operations.
Agent Skills by HolobiomicsLab
Showing 125 vetted skills indexed across 1 GitHub repositories.
HolobiomicsLabmetabolomics-workbench-database
Fetch metabolomics study and compound data from the Metabolomics Workbench REST API.
HolobiomicsLabbenchling-integration
Integrate Benchling resources via API for registry, inventory, ELN, and workflows.
HolobiomicsLabnetworkx
Create, analyze, and visualize graphs in Python with NetworkX.
HolobiomicsLabanndata
Create and manage annotated data matrices for single-cell genomics workflows.
HolobiomicsLabqiskit
Build, transpile, simulate, and run quantum circuits with Qiskit.
HolobiomicsLabuspto-database
Consolidate USPTO patent and trademark data from multiple APIs into structured results.
HolobiomicsLabscientific-brainstorming
Generate hypotheses and interdisciplinary connections for early-stage research planning.
HolobiomicsLabpymc-bayesian-modeling
Infer posterior distributions and compare Bayesian models using PyMC.
HolobiomicsLabpaper-2-web
Convert LaTeX or PDF papers into layout-aware websites with interactive figures and tables.
HolobiomicsLabperplexity-search
Search real-time web results with grounded citations via OpenRouter.
HolobiomicsLabresearch-lookup
Route academic queries to Perplexity Sonar models via OpenRouter for cited sources.
HolobiomicsLabshap
Explain model predictions by attributing outcomes to input features with SHAP values.
HolobiomicsLabzinc-database
Retrieve and analyze ZINC22 compounds by ID, SMILES, or random sampling.
HolobiomicsLabumap-learn
Compute low-dimensional embeddings from high-dimensional data using UMAP.
HolobiomicsLabvaex
Process and analyze billions of rows in CSV, Parquet, Arrow, and HDF5 datasets.
HolobiomicsLabalphafold-database
Retrieve AlphaFold protein structures and confidence metrics by UniProt ID.
HolobiomicsLabdask
Distribute pandas and NumPy workflows across cores or clusters.
HolobiomicsLabget-available-resources
Detect CPU, GPU, memory, and disk resources and output structured JSON recommendations.
HolobiomicsLabexploratory-data-analysis
Detect scientific file types and generate markdown EDA reports with quality metrics.
HolobiomicsLabcosmic-database
Download COSMIC data files via CLI or Python API with authenticated credentials.
HolobiomicsLabiso-13485-certification
Map existing documentation to ISO 13485 clauses and generate a Quality Manual scaffold.
HolobiomicsLabgene-database
Query NCBI Gene data by symbol or ID with batch workflows.
HolobiomicsLabbiorxiv-database
Search bioRxiv preprint metadata by keywords, authors, dates, and categories.
HolobiomicsLabesm
Generate and analyze protein sequences, structures, and functions with ESM3 and ESM C models.
Frequently Asked Questions About HolobiomicsLab
FAQPage SchemaWhat specific research tasks can I perform using these capabilities?▼
You can execute complex bioinformatics pipelines, perform molecular docking, analyze mass spectrometry data, query global genomic and chemical databases, and generate publication-quality scientific documentation, figures, and posters.
Who is the target persona for these research integrations?▼
These capabilities are designed for computational biologists, medicinal chemists, bioinformaticians, and clinical researchers requiring programmatic access to life science databases and high-performance computing environments.
What are the prerequisites for running these research modules?▼
Users require a standard scientific computing environment with support for common data science libraries, specific database credentials for restricted repositories like COSMIC, and appropriate local installations of RDKit, Biopython, or PyTorch.