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HolobiomicsLab
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biorxiv-database

Search bioRxiv preprint metadata by keywords, authors, dates, and categories.

4|1|Updated Jun 18, 2025
Search Tags:#pdf#api#search#metadata#preprints#biorxiv#doi
One-click install
npx skills add https://github.com/HolobiomicsLab/Toolomics --skill biorxiv-database-holobiomicslab
Or copy as Structured Prompt for Agent▼
Please help me install this Agent Skill.
Skill: biorxiv-database
Source: https://github.com/HolobiomicsLab/Toolomics/tree/main/mcp_host/skills/scientific-skills/scientific-skills/biorxiv-database
Command: npx skills add https://github.com/HolobiomicsLab/Toolomics --skill biorxiv-database-holobiomicslab

SYSTEM DOCUMENTATION & REQUIREMENTS

💡 This Skill requires requests, and includes scripts (resource) and references (resource) components.

What problem does it solve?

This skill enables researchers to efficiently search and retrieve comprehensive bioRxiv preprint metadata, including titles, abstracts, DOIs, authors, and dates, facilitating targeted literature exploration.

Core Features & Use Cases

  • Keyword and author based searches across date ranges with optional category filtering.
  • DOI lookups and detailed paper metadata retrieval, including links to PDFs and HTML.
  • Use Cases: perform literature reviews, track authors over time, and assemble structured results for citation workflows.

Quick Start

Search bioRxiv for papers matching your topic and return structured metadata for downstream analysis.

Frequently Asked Questions about biorxiv-database

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I search bioRxiv preprints by keyword, author, or date range?▼

You can search bioRxiv preprints by passing keywords, author names, date ranges, and category filters to the API. The client returns structured metadata including titles, abstracts, DOIs, and authors for targeted literature exploration.

Can I download PDFs directly when retrieving bioRxiv metadata?▼

Yes, you can download PDFs directly. The bioRxiv API client supports optional PDF downloads alongside metadata retrieval, providing links to both PDF and HTML versions of the preprints during your search.

Does the bioRxiv API client support rate limiting for large literature reviews?▼

Yes, the bioRxiv API client implements rate limiting and error handling. This ensures stable retrieval of preprint metadata during large-scale systematic searches across extensive date ranges and categories.

How do I look up a specific bioRxiv paper using its DOI?▼

You can look up a specific bioRxiv paper using its DOI. The client performs DOI lookups to retrieve detailed paper metadata, including abstracts, publication dates, and direct links to PDFs.

What is the best way to track an author's bioRxiv preprints over time?▼

The best way to track an author's bioRxiv preprints is using author-based searches across specified date ranges. This filters preprint metadata chronologically, allowing you to monitor their publications across time.

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