omar-a-hassan
Community@omar-a-hassan
Biomedical Engineering undergraduate
Agent Skills by omar-a-hassan
Showing 17 vetted skills indexed across 1 GitHub repositories.
omar-A-hassanoperational-guardrails
Enforce sequential tool-call execution with planning, retry limits, and evidence standards.
omar-A-hassanpdb
Retrieves protein structure entries and metadata from the RCSB PDB via APIs.
omar-A-hassanopentargets
Query Open Targets Platform GraphQL API for target-disease associations and datatypeScores.
omar-A-hassandeepchem
Featurize molecules and train models for chemical property prediction with DeepChem.
omar-A-hassanpubmed
Search PubMed for biomedical papers and retrieve abstracts, PMIDs, and MeSH terms.
omar-A-hassandatamol
Parse, standardize, and analyze molecular structures using datamol.
omar-A-hassanuniprot
Query UniProt protein data via REST API and return JSON-structured results.
omar-A-hassansandbox-execution
Execute Python scripts in isolated sandboxes with a deterministic workflow.
omar-A-hassanliterature-review
Perform systematic literature reviews with PRISMA-aligned reporting and reproducible search documentation.
omar-A-hassanscanpy
Process single-cell RNA-seq data with Scanpy for clustering and marker-gene discovery.
omar-A-hassanrdkit
Compute molecular properties and fingerprints from SMILES strings with RDKit.
omar-A-hassanhypothesis-generation
Formulate testable IF-THEN-BECAUSE hypotheses from observational data.
omar-A-hassanpydeseq2
Perform differential expression analysis on RNA-seq count data with pydeseq2.
omar-A-hassanbiopython
Parse FASTA files and analyze DNA, RNA, and protein sequences.
omar-A-hassanalphafold
Retrieve AlphaFold predicted protein structures and pLDDT confidence data by UniProt accession.
omar-A-hassanesm
Generate per-residue and per-sequence embeddings with ESM-2 and predict structures via ESMFold.
omar-A-hassanchembl
Retrieve and analyze ChEMBL bioactivity data and targets via the ChEMBL API.