Retrieves protein structure entries and metadata from the RCSB PDB via APIs.
npx skills add https://github.com/omar-A-hassan/medsci-agent --skill pdb-omar-a-hassan
Please help me install this Agent Skill. Skill: pdb Source: https://github.com/omar-A-hassan/medsci-agent/tree/main/.opencode/skills/pdb Command: npx skills add https://github.com/omar-A-hassan/medsci-agent --skill pdb-omar-a-hassan
This skill enables programmatic access to the RCSB PDB data, allowing researchers to search, fetch, and summarize protein structure information without leaving their environment.
Query the RCSB PDB API to fetch kinase-related structures.
High-intent search queries and answers about installing and using this skill.
You can search for protein structure entries by querying the RCSB PDB API using text matches on structure titles, authors, and keywords to retrieve relevant PDB IDs and metadata.
The RCSB PDB API allows you to retrieve entry summaries, PDB IDs, resolution details, experimental methods, and related metadata for protein structures via the Data API or GraphQL API.
Yes, you can fetch RCSB PDB data as JSON by making requests to the Search API and Data API endpoints, then parsing the results while handling basic API response errors.
To find PDB structures for a kinase, perform a text search against the RCSB PDB API to fetch all matching entries, allowing you to compare structural resolutions and experimental methods.
No, retrieving protein structure data via the RCSB PDB API requires no external dependencies, as the skill handles API requests, JSON parsing, and basic error handling natively.
Use the GraphQL API for fetching complex structural data and entry summaries, while the Search API is suited for querying protein structure entries based on text matches across titles and keywords.
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