Paul Emsley
Community@pemsley · LMB, Cambridge, UK
Agent Skills by Paul Emsley
Showing 11 vetted skills indexed across 1 GitHub repositories.
pemsleypdbe-api
Fetch PDBe structure data and search results from within Coot.
pemsleycoot-essential-api
Document essential Coot API functions available at startup.
pemsleycoot-unmodelled-blobs
Detect and interpret unmodeled density blobs in Coot electron density maps.
pemsleycoot-refinement
Refine protein structures in Coot with scripted synchronous workflows and validation checks.
pemsleycoot-figure-making
Generate publication-quality molecular graphics figures in Coot with color schemes and ribbons.
pemsleycoot-NCS-reference-guidance
Rebuild NCS-related chains in COOT using reference-guided sequence and coordinate consistency.
pemsleycoot-rdkit
Convert Coot monomers to RDKit molecules and generate SVG diagrams.
pemsleycoot-model-building
Automate macromolecular refinement workflows in Coot with checkpoints and validation metrics.
pemsleycoot-best-practices
Consolidate best practices for using Coot's MCP API in automated workflows.
pemsleycoot-validation
Validate macromolecular models against density maps using Coot Python APIs.
pemsleycoot-correlations
Compute per-residue and region-wide density-fit correlations in Coot.