Fetch PDBe structure data and search results from within Coot.
npx skills add https://github.com/pemsley/coot --skill pdbe-api
Please help me install this Agent Skill. Skill: pdbe-api Source: https://github.com/pemsley/coot/tree/main/mcp/docs/skills/pdbe-api Command: npx skills add https://github.com/pemsley/coot --skill pdbe-api
This Skill enables querying the PDBe REST and Solr APIs from within Coot to access structure metadata, validation data, revision history, and search capabilities.
From within Coot, fetch the PDBe structure summary for 4wa9 using coot_get_url_as_string_py and parse the JSON response.
High-intent search queries and answers about installing and using this skill.
Query PDBe ligand and compound information in Coot by constructing a REST API URL and parsing the JSON response returned by coot_get_url_as_string_py to extract ligand metadata.
Run advanced PDBe Solr search queries inside Coot to discover related structures, assemblies, and bindings by constructing search URLs and parsing the returned JSON results.
Handle URL construction and error management for PDBe REST queries by validating the endpoint strings passed to coot_get_url_as_string_py and managing exceptions when parsing JSON responses.
The PDBe API integration works without external dependencies in Coot, relying solely on the built-in coot_get_url_as_string_py function to fetch REST and Solr JSON data.
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