Swarup Lab
Community@swaruplab
Swarup Lab at University of California, Irvine.
Agent Skills by Swarup Lab
Showing 177 vetted skills indexed across 3 GitHub repositories.
swaruplabann-data
Analyze annotated single-cell RNA-seq data stored in AnnData structures.
swaruplabpubchem-database
Query PubChem compounds by name, CID, SMILES, or InChI and retrieve properties.
swaruplabopen-notebook
Organize and analyze research materials in a self-hosted AI notebook.
swaruplabvenue-templates
Centralize access to venue-specific LaTeX templates and formatting guidelines.
swaruplabmetabolomics-workbench-database
Retrieve Metabolomics Workbench studies, compounds, and RefMet data via REST API.
swaruplabpolars-bio
Perform genomic interval operations and stream BED/VCF/BAM/GFF files with Polars and DataFusion.
swaruplabbenchling-integration
Automate Benchling registry, inventory, ELN, and workflow operations via APIs.
swaruplabnetworkx
Create, manipulate, and analyze graphs with NetworkX in Python.
swaruplabanndata
Manage AnnData structures for single-cell analysis with h5ad and zarr I/O.
swaruplabscikit-survival
Perform censoring-aware survival analysis with Cox, ensemble, and SVM models in Python.
swaruplabqiskit
Build, simulate, and execute quantum circuits on IBM Quantum hardware.
swaruplabuspto-database
Aggregate patent and trademark data from USPTO APIs for IP analysis.
swaruplabscientific-brainstorming
Facilitate structured scientific brainstorming with phase-based ideation and adaptive techniques.
swaruplabkegg-database
Query KEGG REST endpoints for pathway, gene, compound, and drug data.
swaruplabpymc
Build and infer Bayesian models with PyMC using MCMC and variational inference.
swaruplabpaper-2-web
Convert LaTeX or PDF academic papers into websites, videos, and posters.
swaruplabperplexity-search
Search literature and knowledge sources with cited, grounded answers.
swaruplabresearch-lookup
Route research queries to Parallel Chat API or Perplexity sonar-pro-search and return cited sources.
swaruplabshap
Explain model predictions with SHAP values and feature contribution attributions.
swaruplabzinc-database
Search the ZINC database by ID or SMILES and download 3D structures for docking.
swaruplabumap-learn
Reduce high-dimensional data to low-dimensional representations for visualization and analysis.
swaruplabinterpro-database
Fetch InterPro annotations for UniProt proteins via REST API endpoints.
swaruplabimaging-data-commons
Query IDC imaging data with idc-index for discovery and downloads.
swaruplabgeomaster
Consolidate geospatial workflows with tutorials and code examples across 8 programming languages.