imaging-data-commons

Query IDC imaging data with idc-index for discovery and downloads.

94|11|Updated Mar 26, 2026
One-click install
npx skills add https://github.com/swaruplab/operon --skill imaging-data-commons-swaruplab
Or copy as Structured Prompt for Agent
Please help me install this Agent Skill.
Skill: imaging-data-commons
Source: https://github.com/swaruplab/operon/tree/main/src-tauri/protocols/imaging-data-commons
Command: npx skills add https://github.com/swaruplab/operon --skill imaging-data-commons-swaruplab

SYSTEM DOCUMENTATION & REQUIREMENTS

What problem does it solve?

IDC imaging data discovery, querying, and downloading is streamlined through idc-index, enabling researchers to access public datasets without authentication and manage licenses and citations.

Core Features & Use Cases

  • Data discovery using the idc-index mini-index (index, collections_index, analysis_results_index).
  • Flexible querying (Modality, BodyPartExamined, cancer types, licenses) and downstream downloads with customizable dirTemplate.
  • License checks, citation generation, and optional clinical data joins and visualization via built-in viewers.

Quick Start

Query IDC imaging data with idc-index and download a representative CT study for testing.

Frequently Asked Questions about imaging-data-commons

High-intent search queries and answers about installing and using this skill.

FAQPage Schema
How do I download DICOM imaging data from public collections without authentication?

You can download DICOM imaging data without authentication by querying the IDC mini-index with idc-index, filtering by modality or body part, and using customizable dirTemplates to manage batch downloads of radiology and pathology studies.

What is the best way to query IDC imaging datasets by cancer type or modality?

The best way to query IDC imaging datasets is using the idc-index mini-index, which supports flexible filtering by Modality, BodyPartExamined, cancer types, and licenses across multiple collections to discover relevant radiology and pathology data.

How do I generate citations and check licenses for downloaded IDC imaging data?

You handle license checks and citation generation programmatically during the IDC imaging data query and download workflow using idc-index, ensuring compliance when accessing public radiology and pathology datasets across multiple collections.

Can I join clinical data with downloaded IDC imaging studies?

Yes, you can perform optional clinical data joins with queried IDC imaging studies using idc-index, integrating patient clinical information with radiology and pathology datasets and visualizing results via built-in viewers.

Does idc-index support batch downloads with customizable directory templates?

Yes, idc-index supports batch downloads of IDC imaging data using customizable dirTemplates, allowing you to structure downloaded DICOM files systematically across multiple collections for testing or analysis.

What limitations exist when querying public radiology datasets with idc-index?

Limitations of querying IDC imaging data with idc-index include dependency on the mini-index for discovery, requiring awareness of dataset licenses before download, and needing built-in viewers for visualization rather than external tools.