RConsortiumOfficial·11 Agent Skills Included

pharma-skills

Clinical trial design, SDTM and ADaM dataset derivation

Designs group sequential clinical trials, simulates patient-level trial data, and derives CDISC SDTM and ADaM datasets with submission-ready R code. Eliminates manual statistical programming errors, inconsistent derivations, and slow QC cycles in pharmaceutical R&D workflows. Includes an independent statistical reviewer that audits submission packages for reproducibility, traceability, and data realism.

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npx skills add RConsortium/pharma-skills --all -g -y

Available:

Tells the agent which skill to trigger for each clinical trial task, lists the exact trigger phrases per skill, and sets guardrails for running benchmarks and scripts safely.

All Skills in This Repository (11)

Pure Emerald Level Indicators

📦 In Repo

RConsortium

sdtm-oak

Convert raw EDC/eCRF clinical data into CDISC SDTM domains.

clinical-trial-ipd-sim

Simulate clinical trial IPD with a g-formula causal-DAG simulator.

statistical-reviewer

Review clinical trial datasets for statistical accuracy and consistency.

admiral-adsl

Derive ADSL datasets from SDTM domains using admiral and dplyr.

clinical-trial-simulation

Design and simulate clinical trials using the TrialSimulator R package.

admiral-bds

Derive ADaM BDS datasets from SDTM findings domains using admiral.

admiral-adae

Derive an ADAE dataset from SDTM AE using the admiral R package.

benchmark-summary

Generate combined benchmark analysis reports from GitHub issues for clinical trial design skills.

weekly-summary

Generate weekly GitHub progress summaries and post them to Slack.

issue-to-eval

Convert GitHub issues into standardized benchmark evaluation JSON.

benchmark-runner

Automate AI skill benchmarking against a baseline in isolated sessions.

Official

Advanced

Frequently Asked Questions

FAQPage Schema

How to install pharma-skills?▼

Run `npx skills add RConsortium/pharma-skills --all -g -y` in your terminal to install all skills globally. To install a single skill, use `npx skills add RConsortium/pharma-skills --skill admiral-adsl`.

What does pharma-skills do?▼

It helps design group sequential clinical trials, simulate synthetic patient data, and generate CDISC SDTM and ADaM datasets (ADSL, ADAE, ADLB, ADRS, ADTTE) as QC-ready R code for regulatory submissions.

Can it derive ADaM datasets from SDTM data?▼

Yes. The admiral skill family produces submission-traceable R code for ADSL, BDS findings, adverse events, tumor response, and time-to-event datasets following CDISC conventions.

Does pharma-skills work with Claude Code and Cursor?▼

Yes. All skills follow the universal SKILL.md standard and run in Claude Code, Cursor, Codex, and other compatible agents.

Do I need R installed to use these skills?▼

Yes. Most skills generate and execute R code using packages like admiral, gsDesign, and sdtm.oak, so a local R environment with those packages is required.