skills.rest
ai4proteinai4proteinOfficial·2 Agent Skills Included

VenusFactory

Protein engineering, mutation prediction, and biological database analysis

Runs protein engineering workflows from sequence upload to mutation ranking, structure prediction, and custom model fine-tuning. Queries 11+ biological databases including UniProt, AlphaFold, PDB, KEGG, STRING, ClinVar, and PubMed without manual web searching. Generates publication-ready figures, statistical plots, and manuscript drafts to speed up research reporting.
249|35
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npx skills add ai4protein/VenusFactory --all -g -y
Available:

Instructs the agent on how to discover, load, and route requests to the correct protein engineering and database skills, including naming rules and execution constraints.

All Skills in This Repository (2)

Pure Emerald Level Indicators
📦 In Repo
ai4proteinai4protein

alphafold_database

Retrieve AlphaFold predictions and metadata by UniProt ID.

Official
Advanced
📦 In Repo
ai4proteinai4protein

brenda_database

Retrieve enzyme kinetic data from BRENDA via SOAP API.

Official
Advanced

Frequently Asked Questions

FAQPage Schema
How to install VenusFactory?▼

Run `npx skills add ai4protein/VenusFactory --all -g -y` in your terminal to install all skills in this suite globally.

How to predict beneficial protein mutations?▼

Provide a FASTA sequence or PDB structure and the zero-shot mutation workflow ranks candidate substitutions using protein language models like ESM2 and SaProt.

Can VenusFactory query biological databases?▼

Yes. It downloads data from UniProt, AlphaFold, RCSB PDB, KEGG, STRING, BRENDA, ClinVar, PubMed, and more, saving results to disk as structured files.

Can I fine-tune my own protein model?▼

Yes. Upload a labeled CSV of sequences and the fine-tuning workflow builds a training config, trains adapters on models like ESM2 or ProtT5, and registers the model for later prediction.

Does VenusFactory work without coding experience?▼

Yes. You describe your analysis in plain language and the agent chains the right database, prediction, and visualization steps automatically.

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