PXMeter

Run `npx skills add bytedance/PXMeter --all -g -y` in your terminal to install this skill globally.

Run `pxm -r reference.cif -m model.cif -o output.json` to compare the prediction against the reference. PXMeter reports LDDT, DockQ, and RMSD scores so you can judge prediction quality at a glance.

PXMeter includes built-in evaluators for these models. Run the benchmark workflow on your prediction folders, then aggregate everything into a single summary CSV with success rates for each model.

Ligand metrics are not calculated by default. Add the `-l` flag with the ligand chain IDs (e.g. `-l A,B`) to enable pocket-aligned RMSD and PoseBusters validity checks.

No. PXMeter automatically matches chains and atoms between the reference and model using sequence alignment and geometric symmetry resolution, so chain ordering never distorts the scores.